Look at the fins on the sides of the engine and you'll notice a hole in the middle, that is the drainage hole from the spark plug area.
You need to get something like wire or tubing to poke up it to make sure it is clear to let water out. If they're blocked water just sits around the plugs, which if aren't tightened properly can work it's way into the block, and will also rust the outer plugs.
If possible get some compressed air up it.
It's always a good idea to used compressed air to blow around the spark plug area before removing the plugs anyway, otherwise any crap that is sitting next to the plugs will drop into your engine when you remove them, which you really don't want.
Especially if your drainage holes are blocked, as you'll get leaves and general dirt accumulating there.
You can get cans of compressed air on Ebay for a few quid each.