You would be better off talking to someone like Hill Top, to get professional advice.
http://hilltopmotorcycles.co.uk/Flashing the ECU is normally the first step for standard or lightly modified bikes. Normally they will have ECU setting for standard mods like yours.
The rev limit can normally be raised, fueling altered, limits removed in the lower gears, ignition timing altered, activate quick shifter settings (if present), alter the modes (if present), emissions settings altered etc.
Remember, once you start the modding never ends
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