Did you disconnect the starter motor lead or something simple like that before doing the job?
If the bearing was fully home and cover went back on easily then all should be ok internally.
There is nothing really that can go wrong inside the cover, if the bearing was in crooked then the cover would have been difficult to put back on.
If it is just clicking then it sounds like the starter is not turning.
Remove the cover again and remove the top idler gear, with ignition on thumb the starter button momentarily, you should see the starter spinning at the top.
Spin the bearing in the cover to see if it is running freely.
Is the battery ok and fully charged?
Have you any pieces left over?